best galapagos itinerary

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Hi, we're Clara & Maria.

We're the sisters who founded Across South America 15 years ago... and we're here to help you fall in love with South America just like we are!

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If you’re searching for the best Galapagos itinerary that combines nature, culture, wildlife, and luxury — this journey was made with you in mind!

This trip combines the best Galapagos cruise itinerary with exploring Machu Picchu. These two bucket list destinations are a perfect combination, and we’re sure you’ll love it!

We’ve designed a dream itinerary that takes you from the vibrant streets of Lima to the awe-inspiring ruins of Machu Picchu and from the wildlife of the Galapagos Islands to the opulence of a luxury yacht.

This journey isn’t just about exploration, it’s about creating unforgettable memories with those who matter most. Whether you’re celebrating a milestone birthday, an anniversary, or a special family reunion, this trip offers an extraordinary way to mark the occasion.

Picture waking up each morning in a new, breathtaking location, from the lush landscapes of Peru to the serene waters of the Galapagos. Enjoy world-class accommodations, indulge in gourmet dining, and experience personalized adventures that cater to your family’s interests and desires.

Every detail of this trip is designed to provide a blend of comfort and excitement, making it an ideal choice for those looking to celebrate life’s significant moments. Whether it’s the thrill of exploring ancient Inca ruins, the joy of spotting unique wildlife, or the luxury of relaxing on a high-end yacht, this journey offers a special way to come together and create lasting memories.


best galapagos itinerary

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Best Galapagos Itinerary

Who is This Trip For?

This experience is perfect for:

Adventure Seekers: If you love the thrill of exploring new landscapes and spotting unique wildlife, this trip is calling your name.

Culture Enthusiasts: Immerse yourself in the deep history and vibrant traditions of South American cultures, from the ancient Inca Empire to the hands-on experiences with local artisans.

Luxury Travelers: If you’re all about high-end accommodations, personalized services, and gourmet dining, this journey offers everything you could dream of.

Celebrators: Whether it’s a milestone birthday, an anniversary, or just a well-deserved treat, this trip is a spectacular way to celebrate life’s special moments.

What You’ll Be Doing Each Day

Day 1: Arrival and Discover Lima

Your adventure kicks off with a private transfer to your hotel in Lima. Start your journey with breathtaking views of the Pacific Ocean as you wander through the famous Love Park in Miraflores. Then, dive into Lima’s vibrant culture with a visit to the city center. Known as the Gastronomic Capital of Latin America, Lima promises a culinary adventure. Indulge in local delicacies, from ceviche to pisco sours, and end your day with a fruit and chocolate tasting in the bohemian neighborhood of Barranco.

If you’re a foodie, you’ve got to CLICK HERE to read all about the top 10 best restaurants to try while visiting Lima!

Day 2: Be Awestruck by Cusco: A Gem of a City

After breakfast, fly to Cusco, where a friendly local representative will escort you to your hotel. Once settled, a local guide will take you on a day trip tour of Cusco, where ancient Inca culture comes alive. Explore archaeological sites and colonial art treasures, including the Cathedral’s gold and silver baroque style and the Temple of the Sun, Qoricancha.

Day 3: Explore Inca’s Sacred Valley

best galapagos itinerary

Today, you’ll journey through rivers, valleys, and vibrant landscapes as you explore the Sacred Valley of the Incas. Visit archaeological sites and indigenous towns, including Pisac, Ollantaytambo, Chincheros, Maras, and Moray. Marvel at the salt mines of Maras and uncover the mysteries of ancient Incan experimental farms. This day is a true step back in time, allowing you to connect with the deep history of the region.

Day 4: Conquer Machu Picchu

This is the day you’ve been waiting for! Travel by train to Aguas Calientes, and after a scenic 4-hour journey, arrive at the entrance of the legendary Machu Picchu. With your expert guide, explore this incredible citadel and learn about the Inca Empire. Spend the night in Aguas Calientes, giving you extra time to explore the ruins at your own pace.

Day 5: Leisure Time in Aguas Calientes or Return to Machu Picchu

Before heading back to Cusco, enjoy a leisurely morning in Aguas Calientes. If you’re eager for more, revisit the Machu Picchu ruins or hike up Huayna Picchu for stunning views. Whether you choose to relax or explore, this day is all about soaking in the beauty and tranquility of the region. In the afternoon, you’ll return to Cusco for one last night in the city.

Day 6: Cusco to Quito: The Adventure Continues

best galapagos itinerary

Today, you’ll fly from Cusco to Quito, Ecuador, where your next adventure begins. After arriving in Quito, a private transfer will take you to your hotel, where you can relax and prepare for the Galapagos portion of your journey.

Day 7: Set Sail for Adventure: Galapagos Yacht Experience

In the morning, you’ll fly to the Galapagos Islands and board your luxurious yacht. After a warm welcome from the crew, settle into your accommodations and attend a safety briefing. Your first stop is the Fausto Llerena Breeding Center on Santa Cruz Island, where you’ll see giant tortoises and learn about the incredible conservation efforts at the Charles Darwin Research Station.

Day 8: Wildlife Exploration at El Barranco and Darwin Bay

best galapagos itinerary

Today is packed with wildlife encounters and outdoor activities. Start with a hike at El Barranco, where steep paths lead to breathtaking cliff views and encounters with red-footed boobies and Galapagos doves. Later, explore the pristine shores of Darwin Bay, where you can spot Nazca boobies, sea lions, and enjoy snorkeling in the tidal pools.

Day 9: Pristine Shores and Historical Wonders

In the morning, visit Espumilla Beach, known for its marine iguanas and colorful Sally Lightfoot crabs. Dive into crystal-clear waters for an unforgettable snorkeling experience. Next, explore Buccaneer Cove, a historic site once used by British buccaneers. In the afternoon, head to Egas Port for more snorkeling or a scenic hike, where you’ll encounter sunbathing Galapagos fur sea lions.

Day 10: From Bachas Beach to Quito

Your final Galapagos adventure takes you to the serene shores of Bachas Beach on Santa Cruz Island. As you stroll along the beach, keep an eye out for the diverse wildlife (like blue-footed boobies, hammerhead sharks, land iguanas, frigate birds, green sea turtles, playful sea lions, and more marine life!) that calls this place home. Afterward, your transfer will take you to Baltra Airport for your flight back to Quito, where your incredible journey comes to an end.

Check out a more detailed itinerary of this Adventures in Peru & Luxury Yacht to Galapagos Trip HERE and see how we can create the perfect adventure for you!

Keep in mind that all our trips are customized, so this is just one of our suggestions for the best Galapagos itineraries. But there are different Galapagos cruise itineraries. This is one of the shorter cruises. If you have more time and want to spend more days in the Galapagos -which is a very good idea! – there’s an 8-day cruise that you might really enjoy or longer ones. Or, if you have a special interest in watching certain iconic species, we can find an itinerary cruise that will make your dream come true!

best galapagos itinerary

Where You’re Going

Lima, A Cultural and Culinary Wonderland

Lima is a great place to visit if you’re wanting to experience a blend of history and modern life. Imagine wandering through streets filled with colonial-era buildings, where every corner seems to whisper stories from the past. You’ll find yourself drawn to places like the Plaza de Armas, with its grand cathedrals, or the ancient ruins of Huaca Pucllana right in the middle of the city. It’s a place where the old and new coexist beautifully, and there’s always something fascinating to discover.

But let’s talk about the real star of the show — Lima’s food scene. This city is a foodie’s paradise, often called the culinary capital of South America for a reason. Whether you’re savoring ceviche in a local spot or dining at a top-rated restaurant, your taste buds are in for a treat. The flavors here are bold, fresh, and unforgettable. And don’t miss out on the vibrant neighborhoods like Miraflores and Barranco, where you can soak in stunning coastal views and experience the city’s bohemian charm. Lima is where you’ll find history, culture, and some of the best meals of your life all rolled into one.

Cusco and the Sacred Valley: A Journey Through Ancient Wonders and Breathtaking Landscapes

Cusco is like stepping into a different world, where the echoes of the Inca Empire still linger in the air. The moment you arrive, you’ll feel the rich history that runs through this city’s veins. From the cobblestone streets to the incredible Incan ruins, every part of Cusco tells a story. The city’s heart beats in places like the Plaza de Armas, surrounded by beautiful cathedrals, and the fascinating Qoricancha, once the most important temple in the Inca Empire. It’s a place where you can lose yourself in the past while enjoying the vibrant energy of today.

Then there’s the Sacred Valley — a landscape so breathtaking it almost doesn’t seem real. Picture lush green valleys, dramatic mountains, and ancient terraces that have stood the test of time. This is where you’ll find hidden gems like Pisac and Ollantaytambo, each offering a unique glimpse into the lives of the Incas. Whether you’re exploring bustling markets, hiking through stunning scenery, or simply soaking in the peaceful vibes, the Sacred Valley is a place where nature and history come together in the most magical way. It’s a must-visit for anyone looking to connect with the essence of Peru.

Machu Picchu: Your Unforgettable Journey to an Ancient Marvel

best galapagos itinerary

Machu Picchu is one of those places that you have to see to believe. Tucked away in the Andes Mountains, this ancient citadel feels like a hidden world. As you approach, the mist rises to reveal the stone ruins perched on a mountaintop, surrounded by lush green peaks. It’s no wonder Machu Picchu is one of the New Seven Wonders of the World. Walking through the ancient pathways, you can almost feel the presence of the Inca people who once called this place home. Your guide will share the fascinating history of this mysterious city, from its construction to its rediscovery, making the experience even more special.

But Machu Picchu isn’t just about the ruins — it’s about the journey. Getting there is half the adventure, whether you’re taking the scenic train ride through the Sacred Valley or hiking along the famous Inca Trail. Once you arrive, the view is simply breathtaking, with the Urubamba River winding far below and the mountains stretching as far as the eye can see. Spending time here is like stepping back in time, where you can take in the beauty of nature and the genius of ancient engineering all at once. It’s a bucket-list experience that will leave you in awe.

Galapagos Islands: an Adventure into Nature’s Playground

The Galapagos Islands are like stepping into a nature documentary — only you’re the star. This remote archipelago is famous for its incredible wildlife, and trust me, it doesn’t disappoint. Imagine walking along pristine beaches where sea lions nap in the sun, or snorkeling in crystal-clear waters alongside playful dolphins and colorful fish. Each island has its own unique charm, from the giant tortoises of Santa Cruz to the dramatic landscapes of Santiago Island and Genovesa Island. You’ll get up close and personal with unique species you’ve only seen in books or on TV, and the best part is they’re just as curious about you as you are about them.

But the Galapagos is more than just wildlife. The landscapes here are out of this world, with volcanic craters, lush highlands, and stunning beaches that feel untouched by time. Cruising through the islands on a luxurious yacht, you’ll enjoy gourmet meals inspired by the local flavors and relax in comfort as you take in the breathtaking views. Whether you’re hiking to the top of a volcanic peak, exploring hidden coves by kayak, or simply soaking up the sun on deck, every moment in the Galapagos is an adventure waiting to happen. It’s the kind of place that stays with you long after you’ve returned home.

Planning a trip to South America? Check also our Two Weeks in South America — Our 3 Most Charming Itineraries

What we care about, and you will find in our trips

Unique Luxury and charming Accommodations

You’ll be staying in some of the best accommodations South America has to offer. We’ve handpicked each hotel to ensure you experience the best in comfort, service, and style. Imagine waking up in a beautiful room with stunning views in Cusco or unwinding in a chic, boutique hotel in Lima. And when you’re exploring the Galapagos, you’ll be pampered on a luxury cruise ship, where every cabin feels like a private oasis. Each place you stay is more than just a place to sleep — it’s an integral part of your journey, designed to enhance your experience every step of the way.

Experienced & Passionate local Guides

This trip is all about truly understanding the places you visit, and that’s where our expert guides come in. These are people who know the history, culture, and secrets of each destination inside and out. They’ll take you through ancient ruins, share fascinating stories about the Inca Empire, and introduce you to the unique wildlife of the Galapagos. Their passion and knowledge will bring each location to life, making your experience richer and more memorable. You won’t just see these incredible places—you’ll truly connect with them.

The best Gourmet Dining

best galapagos itinerary

Prepare your taste buds for an adventure of their own. Throughout your trip, you’ll be treated to meals that showcase the best of local cuisine. In Peru, indulge in dishes bursting with fresh flavors, like ceviche, lomo saltado, and other Peruvian classics. The dining experience continues onboard your luxury cruise in the Galapagos, where you’ll enjoy gourmet meals inspired by the region’s bounty, prepared by skilled chefs. Whether it’s a breakfast with a view, a lunch in a charming local restaurant, or a special dinner under the stars, each meal is an opportunity to savor the essence of the places you’re exploring.

Unique Activities and Excursions Tailored to meet your requests.

Every activity and excursion mentioned in your itinerary can be customized for you, so all you have to do is show up and enjoy. From exploring the mystical ruins of Machu Picchu with a knowledgeable guide to snorkeling in the crystal-clear waters of the Galapagos alongside sea lions and tropical fish, each day is packed with unforgettable experiences. Whether it’s hiking in the Sacred Valley, visiting local markets, or observing the unique wildlife of the Galapagos, these adventures are designed to immerse you in the natural beauty and rich culture of each destination.

Personalized Service

We know that every traveler is different, and that’s why we offer personalized service tailored to your preferences. Whether you’re part of a small group or have opted for a private tour, we’re here to make sure your trip is exactly what you’ve dreamed of. From adjusting your schedule to accommodate special interests to providing recommendations based on your tastes, our goal is to create a trip that feels uniquely yours. Every detail is considered, so you can relax and enjoy every moment.

Handpicked Luxury Stays for Your Unforgettable Journey

Every stop on your journey has been carefully chosen to offer you the perfect blend of luxury, comfort, and authentic local charm. From elegant boutique hotels nestled in stunning natural settings to opulent lodges that provide breathtaking views right from your room, each accommodation is designed to enhance your experience.

Imagine unwinding in a beautifully appointed suite after a day of exploration, with world-class amenities at your fingertips and personalized service that anticipates your every need. These stays aren’t just places to rest; they are integral parts of the adventure, reflecting the unique character and beauty of each destination you visit.

Lima: Hotel B

Experience elegance and charm at Hotel B in Lima, Peru.  Nestled in the heart of the bohemian Barranco district, this boutique hotel combines art, history, and luxury for an unforgettable stay. Perfect for honeymooners seeking a blend of sophistication and local culture.

Cusco: Palacio Nazarenas, Belmond Hotel

best galapagos itinerary

Indulge in unparalleled luxury at Palacio Nazarenas, a Belmond property in Cusco, Peru. Nestled in a historic palace, this exquisite hotel offers world-class amenities, stunning suites, and a serene spa, blending ancient Inca heritage with modern elegance. Perfect for honeymooners seeking an unforgettable stay.

Machu Picchu: Belmond Sanctuary Lodge

Discover unmatched serenity and luxury at Belmond Sanctuary Lodge, the only hotel located adjacent to Machu Picchu. Wake up to breathtaking views of the ancient citadel, enjoy exclusive access to the site, and indulge in world-class amenities

Quito: Casa Gangotena

Experience timeless elegance at Casa Gangotena, a stunning boutique hotel in the heart of Quito’s historic center. With its beautifully restored mansion, exquisite décor, and world-class ameniti

FAQ for the Best Galapagos Itinerary

How many days are ideal in Galapagos?

By setting aside at least 5 days for your Galapagos adventure, you ensure you’ll have a solid 3.5 days to truly enjoy a good portion of what this incredible archipelago has to offer. This timeframe is ideal for a cruise-based tour, allowing you to make the most of your visit.

What is the best month to go to the Galapagos?

Many people believe that the best time to visit the Galapagos is between December and May. During these months, the weather is warm, and the ocean is calm, creating ideal conditions for snorkeling, paddleboarding, and swimming.

What is the best way to tour the Galapagos Islands?

Exploring the Galapagos by boat is the most efficient way to experience multiple islands and see a wider variety of wildlife. You’ll visit more islands in less time, waking up each morning in a new location ready to explore. Plus, with professional naturalist guides leading the way, you’ll get the most out of each adventure ashore.

What is the best route to the Galapagos Islands?

The only way to reach the Galapagos Islands is by flying from mainland Ecuador. There are no tourist-class cruises from the mainland, and no road or ferry services to the islands. So, your journey to this unique destination will start with a flight.

What are the rainiest months in Galapagos?

From January to April, the Galapagos experiences its rainy season, which brings warmer sea currents and lighter winds. During this time, heavy rains at higher elevations cause streams to flow downhill, nourishing a diverse range of plant and animal life.

Ready To Make Your Dream Trip a Reality?

Dreaming of an adventure that combines the magic of Peru and Ecuador in one luxurious trip?  Adventures in Peru & Luxury Yacht to Galapagos itinerary  is designed just for you! Picture yourself exploring Machu Picchu, cruising the Galapagos in style, and soaking up the beauty of South America like never before.

Whether you’re celebrating a special milestone or just craving a unique escape, we’ve got you covered. From hiking and Zodiac boat rides to penguin watching, every day is packed with unforgettable experiences.

This trip offers the perfect mix of wildlife encounters, outdoor activities, cultural immersions, and foodie delights. On the Galapagos cruise, savor exquisite meals made from local ingredients, while in Peru, indulge in the rich and diverse flavors of traditional cuisine, giving you a true taste of each destination. And with options for private tours or cozy small group settings, you’ll enjoy a personalized touch that makes your trip truly special.

Ready to start your adventure? CLICK HERE to explore our detailed travel guides and let us craft a bespoke journey that’s perfectly tailored to your dreams. At Across South America, we’re excited to help you create memories that will last a lifetime in this breathtaking part of the world.

And while you’re at it, CLICK HERE to view our full list of itineraries! 

Clara 😍


More about Across South America

best galapagos itinerary


Hi! We are Maria and Clara. We started this business because we know you’re not just a tourist — you’re a traveler seeking an authentic South American experience.

Venturing into foreign territory demands meticulous planning, connections with the right people, and access to resources. That’s where we step in!

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